FastQCFastQC Report
Sun 21 May 2023
EGAF00007936021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504255
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14960.296675293254405No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13790.2734727469236795No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13140.26058244340660974No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8950.1774895638119602No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6230.1235486014020684No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5820.1154177945682244No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5730.11363298331201474No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5460.1082785495433858No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCGGAG5430.10768361245798257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)