FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504255
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31980.634202933039831No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13910.2758524952652924No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9310.18462880883679886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9290.1842321841131967No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6780.1344557813011274No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6060.12017729125145014No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6010.1191857294424448No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5930.11759923054803623No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5660.11224479677940724No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5340.10589880120177292No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCG5300.10510555175456862No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5130.10173424160395039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)