FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487672
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45220.9272625863285158No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31990.6559736872324021No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13740.2817467478141046No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9420.19316261749700617No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6140.12590429633032038No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6110.12528912875867387No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5870.12036778818550174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5610.11503633589789858No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5260.10785938089535589No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5230.10724421332370937No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5090.1043734313226923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5000.10252792860775276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)