FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936027

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936027
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488696
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23240.4755512629528377No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21780.4456758393766268No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18820.3851064874686922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15610.3194214808388037No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15540.3179890975166566No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13210.2703111955080459No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10960.2242703030104605No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10200.2087187126557205No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10060.20585394601142634No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9130.18682371044575768No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC9100.1862098318791232No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8740.17884328907950955No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8300.16983973676887062No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7650.1565390344917904No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6730.13771342511499993No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6380.13055150850426442No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6130.12543585378231048No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT6040.12359421808240706No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6030.1233895918935289No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5390.11029351580532684No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5280.1080426277276671No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5180.10599636583888553No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5180.10599636583888553No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5020.10272234681683501No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)