FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488696
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48480.992027763681307No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44370.9079264000523843No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26220.5365298672385287No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24310.49744626516280055No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16590.33947484734886313No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15450.31614746181675313No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13520.2766546073632688No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10190.20851408646684239No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9970.2040123103115229No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG9360.1915301127899553No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8920.1825265604793164No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8890.18191268191268192No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8800.1800710462127785No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7580.15510665116964328No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7570.15490202498076514No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7250.1483539869366641No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6550.13403015371519308No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.13382552752631494No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6420.13137001325977704No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.13137001325977704No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5690.11643230147167155No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5660.11581842290503708No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.1090657586720579No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC4910.10047145873917528No Hit
GTGCGTGCATCTAACCTGTCCGCCGAACAGC4910.10047145873917528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)