FastQCFastQC Report
Wed 31 May 2023
EGAF00007936030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44680.9237932588730053No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31220.6454974382724983No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27630.5712714356011892No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24790.512552258000488No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22440.4639642061125837No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14770.3053810750571685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13730.28387827762592577No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13200.27292012124269627No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12800.26464981453837216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12590.260307903518602No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12150.25121056614384546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10370.21440770130960307No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10290.21275363996873822No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9600.1984873609037791No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9050.18711568918533344No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7980.1649926187512664No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7770.16065070773149623No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6730.13914791030025347No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6300.13025733059310504No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.1273627232465916No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5820.12033296254791608No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5750.11888565887465936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.11743835520140265No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5580.11537077852532161No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5350.11061535217033523No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5290.1093748061646866No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG5220.10792750249142989No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5200.10751398715621369No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5140.10627344115056506No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5070.10482613747730835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)