FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478913
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22150.4625057160695158No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19910.4157331289816731No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17450.3643668056619887No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16750.34975037219703786No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15530.3242760167295521No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15410.32177034242127484No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14520.3031865913015516No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11980.25014981844301576No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10310.21527918431949017No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10250.21402634716535152No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8740.18249661211952903No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8530.17811168208004377No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8510.1776940696953309No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8010.16725376007750886No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7910.16516569815394447No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7590.15848389999853837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6920.14449388511065683No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6900.14407627272594398No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6500.13572402503168635No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6430.13426238168519125No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6300.13154790118455753No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5680.11860191725845823No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5440.11359056864190364No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5230.10920563860241839No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5140.10732638287121042No Hit
GCCACGGCTCAGCTGAGAGCGGATTTTACGGTACTGGCCAGAAC4960.1035678714087945No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4890.10210622806229941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)