FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936034

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936034
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490005
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45390.9263170783971592No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34010.6940745502596912No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27660.5644840358771849No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20490.4181589983775676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18770.3830573157416761No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16440.33550678054305566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16340.33346598504096897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16190.3304047917878389No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14760.3012214161079989No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14020.28611952939255725No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11010.22469158477974716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10800.22040591422536507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9740.19877348190324587No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9410.19203885674635973No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9270.18918174304343832No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9130.18632462934051694No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC8410.1716309017254926No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8410.1716309017254926No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8310.1695901062234059No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7420.15142702625483415No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7390.1508147876042081No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7150.1459168783992No Hit
GGTATGGATGAACCACCGTCTGGTTGGGAAC6830.13938633279252252No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6800.1387740941418965No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6730.13734553729043583No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6720.13714145774022715No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6610.13489658268793175No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC6340.12938643483229764No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6240.12734563933021092No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6070.1238762869766635No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6040.1232640483260375No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5980.12203957102478546No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5920.12081509372353344No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5780.11795798002061204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5760.11754982092019468No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5220.10652952520892643No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5200.1061213661085091No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5110.10428465015663105No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC5100.1040805706064224No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4930.10061121825287497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)