FastQCFastQC Report
Sun 21 May 2023
EGAF00007936038

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936038
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517243
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15540.300439058624283No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13050.252299209462477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11550.22329930032885897No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC11530.22291263487374405No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9820.18985273846141948No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8960.17322612389147848No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8230.15911283477978436No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7890.15253952204283094No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7620.1473195383987797No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7010.13552624201777502No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6850.13243291837685575No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5930.11464630744157No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5650.10923299106996132No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5520.10671966561171442No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5450.10536633651881223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)