FastQCFastQC Report
Sun 21 May 2023
EGAF00007936039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511007
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29790.5829665738434111No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23070.4514615259673546No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17090.3344376887205068No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15500.30332265507126127No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15480.30293127100020156No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14800.28962421258417204No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13850.27103346920883664No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG13730.2686851647824785No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11610.22719845325015114No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9960.19490926738772657No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9850.19275665499689829No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9820.19216957889030872No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9780.19138681074818936No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9320.18238497711381643No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9080.17768836826110015No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8830.172796067372854No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8370.16379423373848107No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7950.15557516824622755No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7490.14657333461185462No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7420.1452034903631457No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6720.1315050478760565No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6580.12876535937863864No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6170.12074198592191496No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5760.11271861246519128No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5720.11193584432307191No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5650.11056600007436299No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5300.10371677883081835No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5240.10254262661763928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)