FastQCFastQC Report
Wed 31 May 2023
EGAF00007936040

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936040
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511007
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC31870.6236705172336191No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG30190.5907942552646049No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18460.36124749758809566No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17670.3457878267812378No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17040.33345922854285753No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15830.3097804922437462No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15030.2941251294013585No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG13540.2649670161074114No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12670.24794180901631485No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11970.23424336652922562No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11000.2152612390828306No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10890.21310862669200226No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10790.2111517063367038No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10740.21017324615905456No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10080.19725757181408474No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9710.19001696649948044No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9120.17847113640321952No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8770.17162191515967493No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8450.16535977002271984No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7790.15244409567775No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7600.14872594700268293No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7320.14324657000784727No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7310.14305087797231741No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7260.14207241779466817No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7100.13894134522619064No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7020.13737580894195187No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7000.13698442487089219No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6200.1213290620285045No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5900.11545830096260912No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5890.11526260892707928No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5460.1068478513992959No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5320.10410816290187805No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.10195555051104976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)