FastQCFastQC Report
Sun 21 May 2023
EGAF00007936041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487007
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27330.561182898808436No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21050.43223198023847703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16770.3443482331876133No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15130.31067315254195527No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14850.3049237485292819No Hit
GAAGTGACCAATACGGGCCGGACGACGCTGCGGTACGGTAGCTG14680.3014330389501588No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14280.2932196046463398No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12660.25995519571587267No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10980.22545877163983272No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10210.20964791060498106No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10040.20615720102585794No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9760.20040779701318462No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8960.18398092840554653No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8560.17576749410172748No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8380.17207144866500892No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8230.1689914108010768No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7970.1636526785035944No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7890.1620099916428306No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6920.14209241345606943No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6560.1347003225826323No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6010.12340685041488111No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5920.12155882769652182No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5910.12135349183892634No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5570.11437207268068016No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5340.10964934795598419No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5220.10718531766483849No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5150.10574796666167016No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5130.10533729494647921No Hit
ACGGGCTGCGGATGCAGCCACGGATGCAGAGGTGGTACGAACGC5070.10410527980090635No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4950.10164124950976063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)