FastQCFastQC Report
Wed 31 May 2023
EGAF00007936042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487007
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44020.9038884451352855No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28170.5784311108464559No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27920.5732977144065691No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17440.3581057356465102No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16650.3418842028964676No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16370.3361347988837943No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14950.3069771071052367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14890.3057450919596638No Hit
ATGGAAAAAACCCCGGCAGAAACTACCGCCG14290.29342494050393525No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11960.24558168568418934No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11250.23100283979491054No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10680.21929869591196838No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10660.21888802419677747No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10200.20944257474738553No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9300.1909623475637927No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9160.18808764555745605No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8790.18049021882642344No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8620.17699950924730035No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7990.16406335021878538No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7090.14558312303519252No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7010.1439404361744287No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6940.14250308517126037No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6640.13634300944339608No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6580.13511099429782322No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6330.12997759785793633No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6240.12812957513957704No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6120.12566554484843134No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5640.1158094236838485No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.115604087826253No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5350.10985468381357968No Hit
ACTCGTCCGAGCCGCCCGGCTACCGTACCGC5310.10903334038319779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)