FastQCFastQC Report
Sun 21 May 2023
EGAF00007936046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520109
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48250.9276901572554983No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19830.38126623457775194No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19370.3724219346329327No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13660.262637254883111No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13020.250332141916406No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12770.24552545716378682No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11360.21841575515901476No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10830.2082255834834621No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10780.20726424653293832No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8010.15400617947391798No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7510.14439280996867965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7420.14266240345773676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5870.11286095799149794No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5510.10593933194772635No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)