FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475304
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44510.936453301466009No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13120.2760338646424183No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9920.20870853180280413No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5780.1216063824415532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5460.11487384915759179No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5260.1106660158551159No Hit

[OK]Adapter Content

Adapter graph