FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489716
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23430.47844056555227926No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22700.4635339666255544No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16810.34326017528526737No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14350.29302697890205753No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13120.2679103807104526No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11510.23503418307753882No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11320.23115438335688437No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10350.21134698478301708No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8920.18214638688546014No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8350.1705069877234969No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8280.1690775878264137No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7060.14416518962010633No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7030.14355258966421355No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6710.13701819013469033No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6470.1321173904875479No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6280.12823759076689348No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5870.11986539136969183No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5610.1145561917519542No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5570.11373939181076378No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5400.11026799206070458No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5300.10822599220772855No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5300.10822599220772855No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5060.10332519256058613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)