FastQCFastQC Report
Sun 21 May 2023
EGAF00007936050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489716
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30530.623422555113576No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23630.48252456525823134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18080.36919357341806275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16080.3283535763585425No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14700.30017397838747356No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12260.2503491819748589No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12180.24871558209247807No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11810.24116018263646682No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.19439838600331621No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9380.1915395862091498No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9090.18561778663551937No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8940.18255478685605533No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8590.1754077873706393No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8080.16499358812046167No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7990.16315578825278326No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7660.1564171887379624No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC7420.15151638909082No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7050.14396098963480874No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6910.14110218984064235No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6790.13865179001707112No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6740.1376307900905831No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6330.12925859069338147No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6020.12292839114915582No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5670.11578139166373981No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5650.11537299169314459No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5210.10638819234005015No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5010.10230419263409812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)