FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510751
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGCACTGACGGAAGGTCTGTCCGATGAAC19850.3886433898318359No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17350.339695859626315No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16150.31620104512766495No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14800.2897693788166837No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13760.26940720625118697No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11870.2324028734158132No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11040.21615229338758027No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11010.215564923025114No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10870.21282386133360484No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9620.1883500962308444No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7540.14762575109985102No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7510.14703838073738476No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7500.14684259061656266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7500.14684259061656266No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7150.13998993638778975No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6890.13489939324641556No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6810.1333330722798389No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6580.128829899500931No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6290.12315198599709057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5970.11688670213078388No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5560.10885930717707845No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5520.10807614669379013No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5370.10513929488145887No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5250.10278981343159388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)