FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505252
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC32380.6408683191753818No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32170.6367119773895007No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23660.4682811745426045No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC23620.4674894903929128No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20730.4102903105776919No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG20710.4098944685028461No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19040.37684165525322016No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18580.3677372875317663No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG17710.35051815727597313No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16040.31746534402634724No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT15460.30598592385581846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14670.2903501618994086No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT14580.2885688725626024No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT14340.2838187676644526No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13540.26798508467061977No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13320.2636308218473158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13000.2572973486497827No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT12430.24601584951667682No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12220.24185950773079573No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11020.21810898324004657No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10880.2153380887161258No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10760.2129630362670509No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG10540.20860877344374687No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9210.1822852754664999No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9140.1808998282045395No Hit
GTAAGCCAGTACCGCGCGACGGTTTTTGGAGTATGCCGCTTCGT8870.17555596019412095No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8820.1745663550070064No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8740.17298298670762313No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT8700.1721913025579315No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8420.16664951351009002No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG8240.16308693483647763No Hit
ACGCTGCAGACCGCTGCGACGGTGAATGGCACGGCGCGGTGCTG8040.15912851408801945No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG7930.15695138267636743No Hit
GTATGCCAGTACCGCACGACGGTTTTTGGAGTAGGCAGCTTCAT7640.15121167259110305No Hit
TACCGGGTGACCAGCCGGGATGACCACAACGTCACCCGGGGACA7360.14566988354326157No Hit
AACACCGTTGGTGGTACCAACACCTTTGTCCGGAGATTTGGATG7030.13913848930830555No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6990.13834680515861392No Hit
ACCGTGGTCGCCGTTGTCGCCATCGTCACCATCGTCGCCGTCAT6870.135971752709539No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6700.13260709507334953No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6440.1274611481003539No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6410.12686738498808517No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6390.12647154291323934No Hit
GCCCTCAACATCCAGCATTTCCATGTCGCCCAGGGTAAACTTAG6160.12191935905251242No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6090.12053391179055203No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC6090.12053391179055203No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5990.11855470141632295No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5850.11578380689240221No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5760.11400251755559603No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG5610.11103370199425236No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5560.11004409680713784No Hit
GGTTTCTGCAGCCGCGTTGTAGGTCAGAGAGGCGGACAGCTGGT5530.10945033369486909No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5450.10786696539548582No Hit
GGTCGCACCAGCTTCCAGTTCCAGGGTAATGTTGGATTTCAGGT5360.10608567605867962No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5360.10608567605867962No Hit
CAGAGAGGTGGCCTCGTTTTCCAGTTTCAGGTTGTACGGGTTAA5080.10054388701083816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)