FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530039
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20840.3931786151585072No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG17480.3297870534055041No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13920.2626221844052985No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13740.25922620788281614No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11590.21866315497538863No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11410.2152671784529063No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11090.2092298868573822No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11070.20885255613266193No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10840.20451325279837898No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10680.20149460700061694No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9900.18677870873652694No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9440.17810010206796104No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8700.16413886525331156No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8620.1626295423544305No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8480.15998822728138873No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8400.15847890438250772No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT8380.15810157365778746No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8020.15130962061282283No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8010.1511209552504627No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG7760.1464043211914595No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7420.13998969887121512No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7360.13885770669705436No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7090.1337637419133309No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6670.1258397966942055No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6480.1222551548093631No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5600.10565260292167179No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5480.10338861857335027No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5310.10018130741322809No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)