FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530039
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49360.9312522286095928No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23640.4460049166193431No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22200.41883710443948463No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21000.3961972609562692No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20380.3845000084899413No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18790.3545022158746809No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18460.3482762589167967No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13540.2554529006356136No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13380.25243425483785153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11840.2233797890343918No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11760.2218704661355108No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10670.2013059416382568No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10250.19338199641913142No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10010.18885402772248835No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9550.18017542105392245No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9290.17527012163255912No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8480.15998822728138873No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG8470.15979956191902858No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8420.15885623510722796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8400.15847890438250772No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7930.14961163235158167No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7600.14338567539369745No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7150.1348957340874917No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6300.11885917828688077No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.10942591016887436No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5670.10697326045819269No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5530.1043319453851509No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5370.10131329958738886No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)