FastQCFastQC Report
Wed 31 May 2023
EGAF00007936068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444902
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42190.9482987264611084No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13650.3068091399903799No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9920.22297045191974862No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9200.20678711266750882No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8740.19644775703413336No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8200.18431025259495348No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7020.15778755770933822No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC6590.14812250787813944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5600.12587041640630972No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5420.12182458159324976No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5280.118677821183092No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5240.11777874678018979No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)