FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385791
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19020.4930130562921375No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15980.41421391375122796No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11150.2890165918852436No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG11090.2874613456508835No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10580.27424175265882306No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9540.24728415126324876No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9430.24443286650025534No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8570.2221410038077612No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8560.2218817961020345No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8400.2177344728104077No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8250.21384635722450757No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7660.1985531025866337No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7550.19570181782364027No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5870.15215492326155872No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5790.1500812616157453No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5530.14334186126685175No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5320.13789849944659155No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5310.13763929174086487No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5180.13426959156641807No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5160.13375117615496473No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5070.13141830680342464No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4930.1277893989232512No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4640.12027237545717759No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4530.11742109069418415No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4460.11560663675409744No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4100.10627515934793709No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4090.10601595164221042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)