FastQCFastQC Report
Wed 31 May 2023
EGAF00007936070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385791
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35360.9165584474495259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20410.5290429273881454No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18890.48964335611769066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15910.41239945981114123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14750.38233136594684686No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG11000.28512847629934346No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10300.26698393689847616No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10220.2649102752526627No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8720.22602911939366135No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8520.2208449652791278No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8410.21799368051613438No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8300.21514239575314095No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8290.21488318804741427No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5920.1534509617901921No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5860.15189571555583203No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5670.1469707691470252No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5640.14619314602984518No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5510.14282344585539838No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5490.14230503044394505No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.1394537456809516No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5290.13712087632941153No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5150.13349196844923808No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5100.1321959299206047No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5090.13193672221487798No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4580.11871712922281753No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4520.11716188298845748No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4400.11405139051973738No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4350.112755351991104No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC3880.10057258982195023No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)