FastQCFastQC Report
Wed 31 May 2023
EGAF00007936072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399182
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20740.5195625053233863No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19730.4942607632608685No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17020.42637193059807305No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15380.38528791378368765No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG11790.2953539989278074No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10780.2700522568652895No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10580.26504201091231566No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9420.23598258438506745No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8940.22395799409793024No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8890.22270543260968684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8560.21443852678727998No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8150.20416752258368365No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7850.19665215365422287No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC6530.16358453036459558No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6490.16258248117400081No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6190.1550671122445401No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5750.14404457114799765No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5670.14204047276680812No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5570.13953534979032123No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5570.13953534979032123No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5570.13953534979032123No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5320.13327254234910393No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.13277151775380652No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5110.1280117840984814No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.12625819801494054No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4930.12350256274080494No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4660.11673873070429028No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4620.11573668151369551No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4450.11147797245366776No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4150.103962603524207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)