FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478503
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG30670.6409573189718768No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG25600.5350018704166953No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT25190.526433481085803No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24670.5155662555929639No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC19350.4043861793969944No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19020.39748967091115417No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG16800.35109497746095636No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG16770.3504680221440618No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13210.27606932453924005No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12270.2564247246098771No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12230.255588784187351No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA11390.23803403531430317No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8000.16718808450521733No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6720.14043799098438253No Hit
GGTCAGTGGATCCAGTTCGCCGCGTGCTGCACGAGCGGTCAGGT6500.13584031866048907No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG6340.13249655697038473No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6060.1266449740127021No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5830.12183831658317712No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5120.10700037408333908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)