FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478503
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55391.1575685000929985No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC34280.7164009421048562No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG32100.6708421890771844No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG30810.6438831104507181No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28000.5851582957682606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24970.5218358087619095No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC19310.40355023897446823No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18820.3933099687985237No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT11520.24075084168751296No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.19707295461052493No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8250.17241271214600537No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7350.1536040526391684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG7190.15026029094906407No Hit
TCCGCGGCCGAAAAAACCAAAGGTAACGCGA6830.1427368271463293No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6770.14148291651254014No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6490.13563133355485754No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5950.12434613785075538No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5440.11368789746354778No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5380.11243398682975864No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5350.11180703151286407No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5000.10449255281576084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4990.1042835677101293No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC4990.1042835677101293No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4910.10261168686507711No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG4880.10198473154818258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)