FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478232
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73831.5438113718864483No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC35470.741690225664531No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA34470.7207798725304873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19280.4031516084243631No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15310.32013750648220946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14960.31281888288529414No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT13470.281662456715569No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13440.2810351461215477No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13240.276853075494739No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13130.27455293664999414No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC12480.2609612071128657No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12230.25573361882935475No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9940.20784891015239465No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8660.1810836581408187No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8550.17878351929607386No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8190.1712557921678181No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG8000.16728282507234982No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7620.1593368908814132No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7120.14888171431439134No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA6000.12546211880426236No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5790.12107094464611319No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5100.106642800983623No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5030.10517907626423995No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA4870.10183341976279295No Hit
GGCACTCTGGATCAGACCAACGGTCTGTTCG4860.10162431623145252No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4790.10016059151206945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)