FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469533
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12110.25791584404078094No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10680.2274600507312585No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8140.17336374653112774No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7050.15014919079170155No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5770.1228880611160451No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5750.12246210596486296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)