FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457131
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12370.2706007687074383No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10350.22641212256442902No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8490.1857235672050244No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7090.15509777284848325No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5840.12775331360157155No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5210.11397170614112803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)