FastQCFastQC Report
Wed 31 May 2023
EGAF00007936082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426701
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42560.997419738880387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23680.5549553434372078No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17690.41457601458632626No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13300.3116936684001209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12660.29669487533425043No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11320.2652911523525841No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7590.17787631151555774No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5900.1382701235759935No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5870.13756705515103082No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5560.1303020147597498No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5020.1176467831104216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)