FastQCFastQC Report
Sun 21 May 2023
EGAF00007936085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527075
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23840.45230754636436943No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG19990.3792629132476403No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13630.2585969738651995No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13310.25252573163212066No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG12010.2278613100602381No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11990.2274818574206707No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11430.21685718351278283No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9870.18725987762652374No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7090.13451596072665178No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5850.11098989707347152No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5800.11004126547455295No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5570.10567756011952759No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5510.10453920220082531No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)