FastQCFastQC Report
Sun 21 May 2023
EGAF00007936086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527075
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27630.5242138215623963No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24880.47203908362187547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23950.45439453588199025No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT19840.3764170184508846No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14190.2692216477730873No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT12060.2288099416591567No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11130.21116539391927147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8960.16999478252620595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8860.16809751932836883No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6260.11876867618460371No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5780.10966181283498554No Hit
GCGCAGATCAAAGCAGGTGGCACCGCTGCGG5750.1090926338756344No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5620.10662619171844614No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5570.10567756011952759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)