FastQCFastQC Report
Wed 31 May 2023
EGAF00007936089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476662
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17390.36482874657514125No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14790.3102827580130155No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12710.2666459671633149No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10430.21881333103960457No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8350.17517654018990397No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8280.17370799434400058No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8200.1720296562343967No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7740.16237921210417444No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7440.15608544419315995No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7060.14811333817254155No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5960.12503618916548834No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5460.11454657598046415No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4820.10111987110363319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)