FastQCFastQC Report
Sun 21 May 2023
EGAF00007936090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476662
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17550.36818542279434907No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17080.3583251864004263No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16930.35517830244491905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14820.31091213480411695No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10720.2248973066869186No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10180.21356852444709248No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8950.18776407601193298No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8710.1827290616831214No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8420.17664508603580734No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7540.15818336683016476No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.13070058028540138No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5730.12021096710037721No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5500.11538574503526608No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5020.10531571637764285No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)