FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448445
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7620.16992050307172563No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6460.14405333987445507No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6270.13981647693697108No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5830.13000479434490292No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5720.1275518736968859No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5090.11350332816733377No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5040.11238836423641695No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4870.1085974868712997No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4800.10703653736801615No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4710.10502960229236584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)