FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448445
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36600.8161535974311231No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7900.1761643010848599No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7030.15676392868690697No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6650.14829020281193905No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.14003946972315445No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5800.12933581598635283No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5780.1288898304139861No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5740.12799785926925264No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5580.12442997469031877No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5570.1242069819041354No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5100.11372632095351715No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4930.1099354435883999No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4700.10480660950618248No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4700.10480660950618248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)