FastQCFastQC Report
Wed 31 May 2023
EGAF00007936094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446768
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT62091.3897593381799949No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36010.8060111735845003No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA24960.5586792250116391No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19540.43736346381119506No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16840.376929413028686No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14600.3267915338609748No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14560.32589621459012286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13960.31246642552734305No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG13330.29836514701142425No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11940.2672528023493178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9220.20637109193138273No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9170.20525194284281775No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8710.1949557712280199No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.19406045195716792No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8510.19047917487375998No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8120.18174981198295312No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6770.1515327865916986No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6700.14996597786770763No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6510.1457132113311607No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6350.14213193424775275No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6290.14078895534147476No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5220.11683916484618415No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4970.11124341940335924No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4850.10855746159080329No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4830.10810980195537728No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4770.10676682304909932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)