FastQCFastQC Report
Wed 31 May 2023
EGAF00007936097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460921
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT32670.7087982539307169No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20050.43499862232356523No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17750.38509853098470237No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16090.3490836824531752No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT12460.27032832090531783No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10050.21804170345894416No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9080.19699688232907592No Hit
ACCTGCACCAACTACGACCGGTTCCTTCAGCGGAGTGTGCAGTT6830.14818157558453618No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC6320.1371167727224405No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6150.13342850510174195No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6030.13082502207536648No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5990.12995719439990802No Hit
AGAGTCAGATTCAGAATCAGAGTCAGATTCAGAGTCGGAATCAG5250.11390238240392606No Hit
ATCGCTATCAGAGTCGGAGTCAGAGTCGGAATCAGAATCGGAGT5110.11086498553982135No Hit
AGAGTCGCTGTCGGAATCGCTGTCAGAATCAGAGTCAGAATCAG4880.10587497640593509No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4830.10479019181161198No Hit
GTAAGCGCCCTGGGTGGTCTGCATGATAGCACCCGCTTTCGGGG4790.10392236413615348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)