FastQCFastQC Report
Sun 21 May 2023
EGAF00007936098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460921
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42060.9125208007445962No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39180.8500372081115852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32580.7068456416609353No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16430.35646021769457237No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA12980.28161008068627813No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10300.22346562643055967No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9450.20502428832706693No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG6740.1462289633147546No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6500.14102199726200368No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6470.1403711265054098No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6370.13820155731676362No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6210.1347302466149297No Hit
AGCCCGGACCCAGATCCGGATTCCGACAGCG6170.1338624189394712No Hit
AGCGACAGCGACTCTGACTCCGACAGCGACT5420.11759065002462461No Hit
GAAGTTGACGTAACTATCACCGATCACGATG5340.11585499467370763No Hit
GGCTACACTTCCGGCCGTAACCTGTACACCA5250.11390238240392606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.10847845943231053No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4660.10110192419091342No Hit
GACCCGGAACCGGAACCGTCTCCGGATCCAG4640.10066801035318418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)