FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936100

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936100
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468955
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39260.8371805397106332No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12450.26548389504323444No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12390.26420445458519476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12220.26057937328741565No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG8100.17272446183535733No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.15012101374332293No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6480.13817956946828586No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5810.1238924843535094No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5250.11195104007847236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5100.10875243893337314No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4770.10171551641415487No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4770.10171551641415487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)