FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465560
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40420.8682017355442908No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36860.7917346851104047No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33630.7223558724976373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG27630.5934788212045708No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20380.43775238422544893No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16080.345390497465418No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15770.33873184981527626No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14650.3146748002405705No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14400.3093049231033594No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11010.23648938912277684No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10740.2306899218145889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10280.22080934788212045No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9810.2107139788641636No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9800.21049918377867516No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9690.20813643783830224No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9080.19503393762350718No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG8810.1892344703153192No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8310.17849471604089698No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8200.1761319701005241No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8190.17591717501503565No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7830.16818455193745166No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7820.16796975685196325No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7670.16474783056963657No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.1520749205258184No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.14520147779018816No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6250.13424692843027752No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6230.13381733825930064No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5700.12243319872841309No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5560.11942606753157488No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5460.11727811667669044No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5380.11555975599278288No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5360.11513016582180599No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5210.11190823953947933No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5070.10890110834264112No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4690.10073889509408025No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4690.10073889509408025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)