FastQCFastQC Report
Wed 31 May 2023
EGAF00007936106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465043
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38840.8351915844341276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20460.4399593155901712No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12350.26556684005565073No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10890.23417189378186534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8640.18578927109966176No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.18342389843519846No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8210.17654281432039617No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA7480.16084534118350347No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6690.14385766477508533No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5120.1100973458368366No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5090.10945224420107388No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)