FastQCFastQC Report
Wed 31 May 2023
EGAF00007936108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441661
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37500.8490674974697788No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27590.624687260138432No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18600.4211374787450103No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16480.37313686288805215No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16250.3679292489035708No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15880.3595517829285357No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13380.3029472830972171No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12780.2893622031377006No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11380.25766368323216227No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11080.250871143252404No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10820.24498427526994684No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9760.22098396734146777No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8640.19562515141703704No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8040.18204007145752057No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6820.1544170755398371No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6770.15328498554321074No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6730.15237931354590964No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6050.136982889591791No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5970.1351715455971888No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5620.1272469156208042No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5400.12226571963564814No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5390.12203930163632289No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4640.10505795168692732No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4590.10392586169030094No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4510.10211451769569875No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4500.10188809969637347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)