FastQCFastQC Report
Wed 31 May 2023
EGAF00007936110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476140
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40120.8426093165875583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20600.4326458604612089No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16730.3513672449279624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14750.30978283698071996No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12800.268828495820557No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11840.24866635863401518No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11200.23522493384298734No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9290.19511068173226362No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.1696979879867266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6360.13357415886083926No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5050.10606124249170412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)