FastQCFastQC Report
Sun 21 May 2023
EGAF00007936111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420683
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18400.4373839684513042No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16140.38366180710891573No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9160.21774114951162749No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8970.2132246846200108No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5770.13715790749804485No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5240.12455934753721923No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4960.11790350453904722No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4310.10245244043614787No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4240.10078847968660487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)