FastQCFastQC Report
Sun 21 May 2023
EGAF00007936112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420683
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38350.9116127820710607No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36210.860743124870746No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9230.21940511026117054No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.2160771887620845No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5780.137395616176551No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5590.13287915128493427No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4930.11719037850352879No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4870.11576412643249193No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4830.11481329171846735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)