FastQCFastQC Report
Wed 31 May 2023
EGAF00007936114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482399
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41240.8548939778067532No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13410.2779856508823608No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9010.1867748482065676No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7650.15858241828859512No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7260.1504978244150589No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7130.14780295979054683No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6960.14427890605080027No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.13702350129249855No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6530.13536512306202955No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6480.13432863666798647No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6250.1295607992553882No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6080.12603674551564162No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6040.12520755640040715No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.10924566593214331No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5210.10800188225929157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)