FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492117
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG23360.47468386582865457No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21190.43058866082659203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19830.4029529563091704No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17430.3541840659843086No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16500.3352861209834247No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16170.3285803985637562No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15290.31069847211130686No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14500.2946453790460398No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13120.2666032671092443No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA12790.2598975446895759No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10920.22189845097812105No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10460.21255108033252254No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9490.1928403204928909No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9400.1910114871057086No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8840.17963207936324085No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8680.17638082000825006No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8600.17475519033075468No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7840.15931170839454845No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7220.14671307839395914No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7130.14488424500677685No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7070.1436650227486553No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7010.14244580049053376No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG6990.1420393930711599No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC6430.13065998532869216No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6310.12822154081244908No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5980.12151581839278057No Hit
TCTCTGCAACAGGTAAGCGGCCACGGTTCCG5890.11968698500559825No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5850.11887417016685058No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5820.1182645590377898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5600.11379407742467745No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5480.11135563290843437No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5130.10424350306939202No Hit
ATGAACGCACCGGATGATCTGGTCCTGTTCG4990.1013986511337751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)