FastQCFastQC Report
Sun 21 May 2023
EGAF00007936124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527022
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36670.6957963804167567No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27720.5259742477543632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25900.4914405850230161No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18300.34723408130969863No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16340.31004398298363256No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14640.2777872650477589No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13480.2557767986915157No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11240.21327382917601165No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10440.19809419720618876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10090.1914531082193912No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8450.1603348626812543No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7630.1447757399121858No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG7520.14268854051633517No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7000.1328217797359503No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6980.13244228893670473No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6960.13206279813745916No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6890.13073458034009966No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6640.12599094534952998No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6550.12428323675292494No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6100.11574469376989954No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6070.11517545757103119No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5630.10682665998762861No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5480.10398047899328682No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5360.10170353419781336No Hit

[OK]Adapter Content

Adapter graph